PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024978591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 142aa MW: 16335.9 Da PI: 10.7902 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80.8 | 9e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri++++ rqvtfskRrng+lKKA+E+ +LCda+v i+fsstgkl e+ss XP_024978591.1 10 RIDDTTSRQVTFSKRRNGLLKKAKEIAILCDAQVGAIVFSSTGKLSEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 47.6 | 7.3e-17 | 81 | 141 | 9 | 69 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 + ++ + +q e+a Lk+++e+Lq+++R+ +G++L+++ +++Lq+Le +Le+ l++iR kK XP_024978591.1 81 NPMSEVKLWQMEVAVLKQKLETLQETHRQGMGNELSNMGVEDLQRLEIRLETNLRNIRLKK 141 56678899**************************************************999 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 142 aa Download sequence |
MARGKITIRR IDDTTSRQVT FSKRRNGLLK KAKEIAILCD AQVGAIVFSS TGKLSEFSST 60 SMKSVIQRYN RTQEENNQLL NPMSEVKLWQ MEVAVLKQKL ETLQETHRQG MGNELSNMGV 120 EDLQRLEIRL ETNLRNIRLK KV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 9e-65 | MIKC_MADS family protein |