PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | GRF | ||||||||
Protein Properties | Length: 541aa MW: 58283.2 Da PI: 8.0658 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 7.8e-25 | 218 | 262 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_024978574.1 218 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 262 79****************************************985 PP | |||||||
2 | QLQ | 61.4 | 2.5e-21 | 147 | 183 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP++Ll +++k XP_024978574.1 147 GPFTPSQWMELEHQALIYKHFVANVPVPSHLLNPLRK 183 59******************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence |
MDFGMTTFDN TPPLLNHDEK TNTINNHGSG FTKQERSEPD PPPDDQQLFL RTSKSSRTDY 60 FDQPINKTMP MRSDSLLSVS AADAGVSNHM LSFSSSSSSS STNTVKDGNQ TSLFSFYQPS 120 PAYIRNTGYG SGGLQAGMQM PVSRYKGPFT PSQWMELEHQ ALIYKHFVAN VPVPSHLLNP 180 LRKFLNTFLF PGSSSSTSYA PNSYGWGTFH LGFSGNTDPE PGRCRRTDGK KWRCSRDAVP 240 DQKYCERHIN RGRHRSRKPV EGQNGHAVSG PAAPKVVPVV SSSSVPVSGS RASTTALGGA 300 AIGNQFKTLH HHNATIASST ETTPINRIQE SQAFAIPKQN NPVEESSDSL MYPTNYSSFL 360 DQGAPNPNPL PHFVDQWSKV QSGRTSWPEE PKPDWTQLSM SIPMASSDFS SSSNSPTQEK 420 LAVAPLGLSN EFDLDPTHKQ ASNWIPISWG NSMGGPLGEV LNRTSSSNGV RSKNASSPAS 480 EMWDHVNYQL GSSPTGVLQK TTFVSLSNSS SGSSPKGNHG GGGGSGGGGL CDELLLSTLA 540 S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 7e-86 | GRF family protein |