PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978574.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRF
Protein Properties Length: 541aa    MW: 58283.2 Da    PI: 8.0658
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.8e-25218262145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_024978574.1 218 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 262
                     79****************************************985 PP

2QLQ61.42.5e-21147183137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yK+++an+PvP++Ll +++k
  XP_024978574.1 147 GPFTPSQWMELEHQALIYKHFVANVPVPSHLLNPLRK 183
                     59******************************99986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    
MDFGMTTFDN TPPLLNHDEK TNTINNHGSG FTKQERSEPD PPPDDQQLFL RTSKSSRTDY  60
FDQPINKTMP MRSDSLLSVS AADAGVSNHM LSFSSSSSSS STNTVKDGNQ TSLFSFYQPS  120
PAYIRNTGYG SGGLQAGMQM PVSRYKGPFT PSQWMELEHQ ALIYKHFVAN VPVPSHLLNP  180
LRKFLNTFLF PGSSSSTSYA PNSYGWGTFH LGFSGNTDPE PGRCRRTDGK KWRCSRDAVP  240
DQKYCERHIN RGRHRSRKPV EGQNGHAVSG PAAPKVVPVV SSSSVPVSGS RASTTALGGA  300
AIGNQFKTLH HHNATIASST ETTPINRIQE SQAFAIPKQN NPVEESSDSL MYPTNYSSFL  360
DQGAPNPNPL PHFVDQWSKV QSGRTSWPEE PKPDWTQLSM SIPMASSDFS SSSNSPTQEK  420
LAVAPLGLSN EFDLDPTHKQ ASNWIPISWG NSMGGPLGEV LNRTSSSNGV RSKNASSPAS  480
EMWDHVNYQL GSSPTGVLQK TTFVSLSNSS SGSSPKGNHG GGGGSGGGGL CDELLLSTLA  540
S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.17e-86GRF family protein