PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978514.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 313aa MW: 35878.4 Da PI: 9.0241

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.7	1.1e-40	84	160	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adl+++++yhrrh+vCe+hsk+pvv++ g+ qrfCqqCsrfh++ efDe krsCr+rL++hn+rrrk+++ XP_024978514.1 84 CLVDGCTADLTSCRDYHRRHRVCETHSKTPVVTIGGKDQRFCQQCSRFHSVGEFDEVKRSCRKRLDGHNRRRRKPKP 160 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
MIPTVRLSFK QTPQEAYKIM DWVFKASSSW DMTELDFGVL DDTNKNQYME VFSVDPSSGK 60 SFNKWNEQKH STMSGSSKKQ HISCLVDGCT ADLTSCRDYH RRHRVCETHS KTPVVTIGGK 120 DQRFCQQCSR FHSVGEFDEV KRSCRKRLDG HNRRRRKPKP ESMYLNYGSF STNHQGTKLV 180 LFGGSPEYTS IPLRWPYNEK LKQQVHVSVQ QRTPSHPYTR FCIAREKKFP FLLGTEASSQ 240 IPERLVEPKG ALSLLSKHTI HTSKASPSDP LNHHPLLPLG NVRGGDTDNH SEGLLEDESY 300 TWPSQIEVDN LYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	158	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-45	SBP family protein