PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978513.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 326aa MW: 37299 Da PI: 9.019

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.2e-40	97	173	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adl+++++yhrrh+vCe+hsk+pvv++ g+ qrfCqqCsrfh++ efDe krsCr+rL++hn+rrrk+++ XP_024978513.1 97 CLVDGCTADLTSCRDYHRRHRVCETHSKTPVVTIGGKDQRFCQQCSRFHSVGEFDEVKRSCRKRLDGHNRRRRKPKP 173 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MIPTVRLSFK QTPQGVVDFP VFKKESSEAY KIMDWVFKAS SSWDMTELDF GVLDDTNKNQ 60 YMEVFSVDPS SGKSFNKWNE QKHSTMSGSS KKQHISCLVD GCTADLTSCR DYHRRHRVCE 120 THSKTPVVTI GGKDQRFCQQ CSRFHSVGEF DEVKRSCRKR LDGHNRRRRK PKPESMYLNY 180 GSFSTNHQGT KLVLFGGSPE YTSIPLRWPY NEKLKQQVHV SVQQRTPSHP YTRFCIAREK 240 KFPFLLGTEA SSQIPERLVE PKGALSLLSK HTIHTSKASP SDPLNHHPLL PLGNVRGGDT 300 DNHSEGLLED ESYTWPSQIE VDNLYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-45	SBP family protein