PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024978506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 28163.6 Da PI: 6.8897 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.3e-18 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+++v+++G g+W+++a++ g++R +k+c++rw +yl XP_024978506.1 16 KGPWTPGEDKLLAEYVAMHGEGRWSSVASCSGLKRNGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 8.9e-16 | 70 | 113 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ XP_024978506.1 70 GHLSPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 56699****************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MTEMMSWRMQ EEGWRKGPWT PGEDKLLAEY VAMHGEGRWS SVASCSGLKR NGKSCRLRWV 60 NYLRPGLKKG HLSPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKEKP 120 LENQKKRKYE VQLNHNQEHQ RGPEIMNDNT TLPYAEEIDR GLFTESSQTT LQETNQMIIN 180 DQQQQQNPSV MAQDVARWWD TVSEDGLWSR FLWNNLDSDH PNQAVMEQPF QMLDSLSMN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-61 | MYB family protein |