PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978459.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 498aa    MW: 56025.7 Da    PI: 9.4689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978459.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.7e-17135222297
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k++++s v+   ++ lp +f++++  +k e++t  lede+g++ evk+i  k++    l++GWk+F+  ++L egD++vF+l++  +f  +v +
  XP_024978459.1 135 IKIMVRSQVSCGFWMGLPLPFCRSFL-PK-EDTTFLLEDEKGEQCEVKYIAYKSG----LSAGWKKFAVTHNLIEGDVLVFHLVEPWKF--KVYI 221
                     699*******************9995.33.6679***************666666....9**********************9875555..6666 PP

                     E CS
              B3  97 f 97 
                     +
  XP_024978459.1 222 L 222
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MAAPVTGEAS LDEERSGSQI VINKLKTPNS AEDNLIIAQL SKTALTQLHV PCASSLSKRR  60
KSKPMRFDVS RTDVRKEHSS PKIKIVLSDP SVPCLSLTKE KSPTKGFKTP VPSSPAMIRA  120
LEVQSSLGIE FPSCIKIMVR SQVSCGFWMG LPLPFCRSFL PKEDTTFLLE DEKGEQCEVK  180
YIAYKSGLSA GWKKFAVTHN LIEGDVLVFH LVEPWKFKVY ILKANVSNEV DGALSLLNLE  240
AHTEQITPVT PSPKTKRSKH TEPLSLTVVE KKHKKTPPSS RSIPPSQLSS HRIEHSGNDS  300
EEVGSEVLEG SRPSKPVLLF QEVKAFEEFR IVVKGLCIDS ELPDDVRASY YKLCLDRKQF  360
LHDGLREGLY YKLVAGMIGE TVSIANEIKN CKPTTTKEEF GVWDDSLRSF ELLGMKVGFL  420
RDRIHTLATL VSEGALDMKR YVEARNEQKR IKDEIKKLTE KISELKENAR KFERISGSLK  480
RKAEKYEHRF RDALGTPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15884KRRKSKPMRFDVSRTDVRKEHSSPKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-37B3 family protein