PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978458.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 499aa    MW: 56153.8 Da    PI: 9.4689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978458.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.8e-17136223297
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k++++s v+   ++ lp +f++++  +k e++t  lede+g++ evk+i  k++    l++GWk+F+  ++L egD++vF+l++  +f  +v +
  XP_024978458.1 136 IKIMVRSQVSCGFWMGLPLPFCRSFL-PK-EDTTFLLEDEKGEQCEVKYIAYKSG----LSAGWKKFAVTHNLIEGDVLVFHLVEPWKF--KVYI 222
                     699*******************9995.33.6679***************666666....9**********************9875555..6666 PP

                     E CS
              B3  97 f 97 
                     +
  XP_024978458.1 223 L 223
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MAAPVTGEAS LDEERSGSQI VINKLKTPNS AEDNLIIAQL SKTALTQLHV PCASSLSKRR  60
KSKPMRFDVS RTDVRKEHSS PKIKIQVLSD PSVPCLSLTK EKSPTKGFKT PVPSSPAMIR  120
ALEVQSSLGI EFPSCIKIMV RSQVSCGFWM GLPLPFCRSF LPKEDTTFLL EDEKGEQCEV  180
KYIAYKSGLS AGWKKFAVTH NLIEGDVLVF HLVEPWKFKV YILKANVSNE VDGALSLLNL  240
EAHTEQITPV TPSPKTKRSK HTEPLSLTVV EKKHKKTPPS SRSIPPSQLS SHRIEHSGND  300
SEEVGSEVLE GSRPSKPVLL FQEVKAFEEF RIVVKGLCID SELPDDVRAS YYKLCLDRKQ  360
FLHDGLREGL YYKLVAGMIG ETVSIANEIK NCKPTTTKEE FGVWDDSLRS FELLGMKVGF  420
LRDRIHTLAT LVSEGALDMK RYVEARNEQK RIKDEIKKLT EKISELKENA RKFERISGSL  480
KRKAEKYEHR FRDALGTPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15884KRRKSKPMRFDVSRTDVRKEHSSPKIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-37B3 family protein