PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978403.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 308aa MW: 35080.7 Da PI: 4.9059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978403.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.3e-12	145	188	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_024978403.1 145 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 188 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MQQPTTQQAL LEDLFPPTHS TFIHCEDDLL LFPSPSYSSI FTNSSSFLQP TFQSLYQSIY 60 SLDTSFTDSI SSSLYDQQTV PDQQEFKTLI TAEEDEDDDY IHKIHENQKN VVSDDQIPTV 120 FSMGSWNGEK KSKSKRVEGQ PSKNLMAERR RRKRLNDRLS MLRSIVPKIS KMDRTSILGD 180 TIDYMKELLG KIHDLKEEEI DGSKLVGSFK GFTVNEVQVR SPPKFDVERR NTDTRIEICC 240 SAKPGLMLST MTTLEALGLD VQHCVISCFN DFFLQASCSE GLEHEPMMSC EDMKQILFKN 300 AGYGGRCM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	155	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	5e-81	bHLH family protein