PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978383.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 392aa MW: 43569.5 Da PI: 4.8388

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.3	2.6e-31	55	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......t 78 lp+G++F+Ptd el+ e+L++k+ + + +e+i+++d i++ +P++Lp ++++ ++++fF +++++y+tg+rk+r t XP_024978383.1 55 LPVGVKFEPTDVELL-EHLAAKCGVGNekphqfI--DEFIPTLDvddgICYKHPENLPG-ATKDGNSIHFFYRTKNAYTTGQRKRRRicnesglT 145 799**********.999999866554554322..3346655444669*****4.45667899**************769999999 PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+ +W++tgk+k+v++ +g ++g+kk++v+y g +k+ k +Wvmhey l XP_024978383.1 146 KDVRWHKTGKTKAVMQ-NGVQIGCKKIMVLYgtAGGGSKPCKLNWVMHEYYL 196 99**********.99********7766778888*******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MAKSWIVDGR GIARKVKTSS LPLVHQIKDC GANRECPQCH CRIDNSDVSV EWPGLPVGVK 60 FEPTDVELLE HLAAKCGVGN EKPHQFIDEF IPTLDVDDGI CYKHPENLPG ATKDGNSIHF 120 FYRTKNAYTT GQRKRRRICN ESGLTKDVRW HKTGKTKAVM QNGVQIGCKK IMVLYGTAGG 180 GSKPCKLNWV MHEYYLGAIE DEKEGQYVVS KIFYQPQKQT EKTDNHFLTD ELDAWMTQTS 240 PRTPETDAPD PCRPGKSVSC EDATTDYILQ SPQQESGWNV ENKYLPSSSN TGRTGNMELP 300 IWEDDSQAID LDAFDDSLFC NEDFDAYALL GDSRPNHGPQ PGSTNDTSGT TKGATSGIAD 360 LDNLDMGTPP DFSLADLQFS SQDSIFGWLE RL

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MAKSWIVDGR GIARKVKTSS LPLVHQIKDC GANRECPQCH CRIDNSDVSV EWPGLPVGVK  60
FEPTDVELLE HLAAKCGVGN EKPHQFIDEF IPTLDVDDGI CYKHPENLPG ATKDGNSIHF  120
FYRTKNAYTT GQRKRRRICN ESGLTKDVRW HKTGKTKAVM QNGVQIGCKK IMVLYGTAGG  180
GSKPCKLNWV MHEYYLGAIE DEKEGQYVVS KIFYQPQKQT EKTDNHFLTD ELDAWMTQTS  240
PRTPETDAPD PCRPGKSVSC EDATTDYILQ SPQQESGWNV ENKYLPSSSN TGRTGNMELP  300
IWEDDSQAID LDAFDDSLFC NEDFDAYALL GDSRPNHGPQ PGSTNDTSGT TKGATSGIAD  360
LDNLDMGTPP DFSLADLQFS SQDSIFGWLE RL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	RKRRR
2	134	138	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	7e-94	NAC family protein