PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978362.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 304aa    MW: 35193.6 Da    PI: 9.6284
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.71.8e-1721107799
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      s+  ks+r+ +p kf+e+hgg+   + t+tl+ ++g  W+v l   ++ g++ +++GW eF++  +L+ g  ++Fk++g s+f  +v +f+ 
  XP_024978362.1  21 VSNDIKSARIKIPEKFTERHGGN--LPETVTLKVPNGDIWQVDL--INSNGAIRFSNGWMEFAEHYNLRFGHLLMFKYEGLSNF--RVLIFDP 107
                     47788999************999..7789***************..9999999*************************998999..9999885 PP
2B340.64.5e-132183021399
                     TT-EE--HHH.HTT..---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeeh..ggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ++++p  f++e+  g+kk e   l++ +d++ ++We+ l     s+r +  +GWk F k+ng+ + D++vF+l++ ++  l+v++fr+
  XP_024978362.1 218 RVNVRIPLWFMKENgsGLKKVERCVLRVgMDKRYKKWEIDL-----SDRALRMGGWKMFMKDNGVSVDDVCVFELIDPHQNLLKVTIFRS 302
                     55689*********99666666555665367888*******.....44444456**********************998888*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MESHRRLSFP ADPFNFISII VSNDIKSARI KIPEKFTERH GGNLPETVTL KVPNGDIWQV  60
DLINSNGAIR FSNGWMEFAE HYNLRFGHLL MFKYEGLSNF RVLIFDPSAC EMVYPKNRNH  120
QLAYNSTEIK ARSSLDSCIK VNLDDSKETV KLEQEACSSW GQDHETKIKI DGEREGEYLS  180
TRVKEKGRKR AIEAAKARFA SNKPFFMVYM TPFHIVGRVN VRIPLWFMKE NGSGLKKVER  240
CVLRVGMDKR YKKWEIDLSD RALRMGGWKM FMKDNGVSVD DVCVFELIDP HQNLLKVTIF  300
RSSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-30B3 family protein