PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978338.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 368aa MW: 41162.7 Da PI: 6.2715

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.4	1.7e-09	21	64	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC++C +H+ H +vp XP_024978338.1 21 WMCEACEQAPAAFLCKADAASLCATCDAVIHSAnplarrHHRVP 64 78*****************************6688999977776 PP
2	CCT	66.1	9.8e-23	299	342	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+a++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_024978338.1 299 RKARVLRYREKKKTRKFEKTIRYASRKAYAEKRPRIKGRFAKRT 342 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MLKEDRSTLC LKGSTTRGGV WMCEACEQAP AAFLCKADAA SLCATCDAVI HSANPLARRH 60 HRVPVMPIPY GHQETDHPRS ILGVGIDSQG GFLSQESECT IDDQDENEAA SWLLFDDDPA 120 KNSKNQNQYG NSNSNTNGFL FNGDEYLDLV EYNSCQETQF SDDHKCNDLL FDDQYMTDAI 180 VTHKIQQRCD TVPRRSYGGS DADSVVPLQY GEAKKHHHHD FQHHKFQLGM EYETSNGAGN 240 GYPASLSHSV SVSSLDVGVV PESTVTEVSI SNARTPKGTI DLFSNPSDQM PTQLTPIDRK 300 ARVLRYREKK KTRKFEKTIR YASRKAYAEK RPRIKGRFAK RTNDDVEVEQ LFSTTLMTEG 360 GYCIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MLKEDRSTLC LKGSTTRGGV WMCEACEQAP AAFLCKADAA SLCATCDAVI HSANPLARRH  60
HRVPVMPIPY GHQETDHPRS ILGVGIDSQG GFLSQESECT IDDQDENEAA SWLLFDDDPA  120
KNSKNQNQYG NSNSNTNGFL FNGDEYLDLV EYNSCQETQF SDDHKCNDLL FDDQYMTDAI  180
VTHKIQQRCD TVPRRSYGGS DADSVVPLQY GEAKKHHHHD FQHHKFQLGM EYETSNGAGN  240
GYPASLSHSV SVSSLDVGVV PESTVTEVSI SNARTPKGTI DLFSNPSDQM PTQLTPIDRK  300
ARVLRYREKK KTRKFEKTIR YASRKAYAEK RPRIKGRFAK RTNDDVEVEQ LFSTTLMTEG  360
GYCIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	2e-75	CO-like family protein