PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978324.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 144aa    MW: 16352.7 Da    PI: 8.2811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.94.7e-4051041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+ rr+C++dCv+ap+fp ++p++f +vh+++Gasn+ k+l++lp + r da++sl+yeA++r+++PvyG+vg+i++l++q++ ++++la
  XP_024978324.1   5 RCAVCKYFRRRCPSDCVFAPCFPPDNPQRFTCVHRIYGASNIGKMLEELPMHLRVDAVDSLYYEAKWRIQEPVYGCVGIISSLHRQIHIAQTQLA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_024978324.1 100 KARAE 104
                     99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    
MSSTRCAVCK YFRRRCPSDC VFAPCFPPDN PQRFTCVHRI YGASNIGKML EELPMHLRVD  60
AVDSLYYEAK WRIQEPVYGC VGIISSLHRQ IHIAQTQLAK ARAETAFLRA NVVAAKTMPS  120
SGEFMAQQNS IDNGLDDQSN PWFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.17e-48LBD family protein