PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978320.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 347aa MW: 38979.7 Da PI: 7.8251

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.8e-52	4	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLkkk+++++l++ + i++vdiyk++PwdLp+ + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_024978320.1 4 MLPGFRFHPTDEELVGFYLKKKIQHRSLSI-QLIQQVDIYKYDPWDLPNLAPSGEKEWYFYCPRDRKYKNSTRPNRVTGAGFWKATGTDRPIYSS 97 579*************************.89***********8888999***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfy+gra kg ktdW+mhe+rl XP_024978320.1 98 dGTKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 131 56667*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MDDMLPGFRF HPTDEELVGF YLKKKIQHRS LSIQLIQQVD IYKYDPWDLP NLAPSGEKEW 60 YFYCPRDRKY KNSTRPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV FYRGRAAKGI 120 KTDWMMHEFR LPTLAEPASA KKIQDKNIPP NDGWAICRIF KKMSSMAQRA LSQTCVSSSE 180 FFSPAMNHFS PENISSITHH HLSDITDLKP SPTCSFSDLA IPSSYTSLTQ TTYSNQSPFL 240 PSPFTDNHGG FMLSSADPTA NVGSMVINLE GGSKNSDQSM GRGQQFQAFD NFAVNHYCDQ 300 ELGSAGFPIS FPATGGTDEW KLDMSWDSSP PPCRSESTTY STNRYHN

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MDDMLPGFRF HPTDEELVGF YLKKKIQHRS LSIQLIQQVD IYKYDPWDLP NLAPSGEKEW  60
YFYCPRDRKY KNSTRPNRVT GAGFWKATGT DRPIYSSDGT KCIGLKKSLV FYRGRAAKGI  120
KTDWMMHEFR LPTLAEPASA KKIQDKNIPP NDGWAICRIF KKMSSMAQRA LSQTCVSSSE  180
FFSPAMNHFS PENISSITHH HLSDITDLKP SPTCSFSDLA IPSSYTSLTQ TTYSNQSPFL  240
PSPFTDNHGG FMLSSADPTA NVGSMVINLE GGSKNSDQSM GRGQQFQAFD NFAVNHYCDQ  300
ELGSAGFPIS FPATGGTDEW KLDMSWDSSP PPCRSESTTY STNRYHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	2e-95	NAC family protein