PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978280.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 206aa MW: 23685.4 Da PI: 7.631

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++lv ++ ++G +W++ + + g+ R++k+c++rw +yl XP_024978280.1 14 KGSWSSEEDQKLVTYISRYGIWNWSKMPVYAGLSRSGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	54.2	3.3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE++ +++++ lG++ W++Ia++++ gR+++++k++w+ + XP_024978280.1 67 RGNFTNEEEKTILHYHSILGNK-WSAIAKKVP-GRSDNEVKNHWHAH 111 89******************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MRTPRCNSQS GLTKGSWSSE EDQKLVTYIS RYGIWNWSKM PVYAGLSRSG KSCRLRWMNY 60 LNPKVKRGNF TNEEEKTILH YHSILGNKWS AIAKKVPGRS DNEVKNHWHA HLKKRITQDP 120 VPVTKPNKIT SQDTESPTEL VDHFFSSFST GHTTSSCTLE TGSVFEPVIE FETSYNITSP 180 GTVEEVESFW QQLYSNNEDF ELQDLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	5e-50	MYB family protein