PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978256.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 322aa MW: 35412.9 Da PI: 4.8828

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.2e-13	142	189	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++N f L llP++ kK++Ka++Le A +YI +Lq XP_024978256.1 142 QDHVLAERKRREKLNRHFISLSALLPNL-----KKMDKASVLEDASNYITELQ 189 56999*********************.....9***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence
MAMDLSSMWL PELEMEDPGL MNQYNQISKL YDTIDNFSTD SFSSESNTEN ACFTDRAFQT 60 PPSFGEQAEM KLPSYQTASN FNRPPTSKPL NAPTVSTSNT FTISFGDLKP KEEITPLNDS 120 AGYESAGTGK IPTVARNTFQ AQDHVLAERK RREKLNRHFI SLSALLPNLK KMDKASVLED 180 ASNYITELQG RVKELEGLSS IKGKDIDVKE SVIALKRSRP SGNDEDDSSS NETNSADVPC 240 KSSAEIEVRM SGSSVLVRIQ SPKTSSLLVK VLRKMQKLGL SIISSNSMPF ADTTLLITIA 300 AQTEGDFFMT AADLVKNLQL VI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	153	ERKRRE
2	149	154	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-39	bHLH family protein