PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024978136.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HD-ZIP

Protein Properties

Length: 285aa MW: 31134 Da PI: 8.7503

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024978136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	139	193	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ +++++ ++++eLA++l+L rqV vWFqNrRa+ k XP_024978136.1 139 RKKLRLTKAQSALLEEAFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTK 193 678899***********************************************98 PP
2	HD-ZIP_I/II	122.1	2.8e-39	139	228	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEe F+++++L+p++K+elareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++++alkeen+rL+ke +eL+ +l XP_024978136.1 139 RKKLRLTKAQSALLEEAFKHHSTLNPKQKQELARELKLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCEALKEENSRLHKELQELK-AL 228 69*************************************************************************************9.54 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGFHGVSNKG LILELGLNST SSSSSILENN STTTKKPCST LSFQPSLTLS LSGDHATKTP 60 PPCVAGVGGN TGGEHGGGLY RQDSVSGGGS SFSVASVSVK REREVKSEDS EKASRVISRT 120 SVDDHEVEED DDDGSVNGRK KLRLTKAQSA LLEEAFKHHS TLNPKQKQEL ARELKLRPRQ 180 VEVWFQNRRA RTKLKQTEVD CEYLKKCCEA LKEENSRLHK ELQELKALKL SAHQSLYMQL 240 PAATLTMCPS CERIGDTTSS AKSRPFNMAP KSHLFNPFSN PSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	196	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-71	HD-ZIP family protein