PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024978053.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29707.6 Da    PI: 4.3167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024978053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34e-2163116356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe+++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  XP_024978053.1  63 KKRRLTPEQVHMLEKSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 116
                     56689************************************************9 PP
2HD-ZIP_I/II135.22.2e-4362153192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+ eqv++LE+sFeee+kLeperK+ela++LglqprqvavWFqnrRAR+ktk lEkdy++L+++yd+l+++ +++ ke+e+L++e+ 
  XP_024978053.1  62 EKKRRLTPEQVHMLEKSFEEENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKTLEKDYDRLRSSYDTLTTDFDSMVKENEKLKAEVV 153
                     69**************************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MESGRLFFGC NSSDMLFLGN GDNYFAGTRI GFNMEEASKK RPFLSSIDDM LEEEYYDEQS  60
TEKKRRLTPE QVHMLEKSFE EENKLEPERK TELAKKLGLQ PRQVAVWFQN RRARWKTKTL  120
EKDYDRLRSS YDTLTTDFDS MVKENEKLKA EVVSLTEKLQ SKEVAAMTAG NEDVPAPAVA  180
NVKVEDHFST GSGGSAVVDD VDGPQLVDSS GDSYFHPHDQ YAAAEEDDGS DDGNHFPNYP  240
FQTADHEVEE DDSLGLWVWP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-76HD-ZIP family protein