PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024977997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 30207.9 Da PI: 6.9366 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.5e-13 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + G +W+ +++ g+ R++k+c++rw +yl XP_024977997.1 14 RGPWTMEEDRKLMSFIVNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++ E++++++++++lG++ W++Ia++++ gRt++++k++w++ XP_024977997.1 67 RGTLSEAEEDQIIELHARLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 678899****************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence |
MGRQPCCDRA GLKRGPWTME EDRKLMSFIV NNGIQCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGTL SEAEEDQIIE LHARLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLLG 120 VDPKTHKHID EEKKQDSATE NDQYNIIYEA TMTNGNTQVD IKKTNEHRFE NDTNSQNHHT 180 MMWGNFDMDS WTNTNQEKST SISKSDTYSL SYEDSVSINP NFSIEGDYSL QEWVDGVDSL 240 LLWDCFKQQE DTFLVLGNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14340.1 | 7e-82 | MYB family protein |