PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024977854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 144aa MW: 16067.4 Da PI: 7.7673 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+ rr+C++dCv+apyfpa++p+kf +vh+++Gasn+ kl+++lp + r da++sl+yeA++r+rdPvyG+vg+i+ l+qq++ ++++la XP_024977854.1 5 RCAVCKYFRRRCPSDCVFAPYFPANNPQKFTCVHRIYGASNIGKLIEELPVQLRADAVESLYYEAKCRIRDPVYGCVGIISLLHQQIHIAQSQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024977854.1 100 KAQAE 104 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence |
MTSTRCAVCK YFRRRCPSDC VFAPYFPANN PQKFTCVHRI YGASNIGKLI EELPVQLRAD 60 AVESLYYEAK CRIRDPVYGC VGIISLLHQQ IHIAQSQLAK AQAEIAFLDA NVTVAETMLA 120 SSGSLGQQNG IDHSLDHPSN PWFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 4e-55 | LBD family protein |