PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977852.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

WRKY

Protein Properties

Length: 489aa MW: 53350.5 Da PI: 8.3569

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.5e-30	220	276	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk se+prsYY+Ct+ +Cpvkkkv +s d+++ +i+Y+g+Hnhe XP_024977852.1 220 NDGYNWRKYGQKQVKASEHPRSYYKCTHVNCPVKKKVGQSL-DGHISDIVYKGQHNHE 276 8**************************************.*************8 PP
2	WRKY	103.4	1.2e-32	376	434	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +dpk v++tYeg+Hnh+ XP_024977852.1 376 LDDGFKWRKYGQKVVKGNTNPRSYYKCTYTGCNVRKHVERAPSDPKSVVTTYEGKHNHD 434 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MAETNGGSAA PPPPTSRRVP PMIAVPPASS FENIFTGGPG PGFSPGPMTL VSNFFSDHYP 60 DVDCRSFSQL LAGAMASPAS QIPSATSEFE DCSSSKKLGG FKQNRPMDLV IAQSPTGFMF 120 PSMFSPSGLL NSPGFLSPLQ SPFGMSHQQA LAHVTAQAAM SQSYFNHVQP ANPSSEEELQ 180 LVNVKSDLED SQIGSPDDLS VSQSDVSEPR HVISVSSDTN DGYNWRKYGQ KQVKASEHPR 240 SYYKCTHVNC PVKKKVGQSL DGHISDIVYK GQHNHEPPVL SKQAREGADV NKRNHSQSET 300 RVMEEPAAAR DQGSNQLIRI DESDDEPNPK RRNTDVGPVP APLPLPAPVP VDSTSSHKMV 360 AEPKIVVQTR SEVDLLDDGF KWRKYGQKVV KGNTNPRSYY KCTYTGCNVR KHVERAPSDP 420 KSVVTTYEGK HNHDIPVSRH RSYNSNNGGG VMGKSEKGSA IKPSQRKETK FGNNERPVLL 480 QMKEEKISA

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MAETNGGSAA PPPPTSRRVP PMIAVPPASS FENIFTGGPG PGFSPGPMTL VSNFFSDHYP  60
DVDCRSFSQL LAGAMASPAS QIPSATSEFE DCSSSKKLGG FKQNRPMDLV IAQSPTGFMF  120
PSMFSPSGLL NSPGFLSPLQ SPFGMSHQQA LAHVTAQAAM SQSYFNHVQP ANPSSEEELQ  180
LVNVKSDLED SQIGSPDDLS VSQSDVSEPR HVISVSSDTN DGYNWRKYGQ KQVKASEHPR  240
SYYKCTHVNC PVKKKVGQSL DGHISDIVYK GQHNHEPPVL SKQAREGADV NKRNHSQSET  300
RVMEEPAAAR DQGSNQLIRI DESDDEPNPK RRNTDVGPVP APLPLPAPVP VDSTSSHKMV  360
AEPKIVVQTR SEVDLLDDGF KWRKYGQKVV KGNTNPRSYY KCTYTGCNVR KHVERAPSDP  420
KSVVTTYEGK HNHDIPVSRH RSYNSNNGGG VMGKSEKGSA IKPSQRKETK FGNNERPVLL  480
QMKEEKISA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-109	WRKY family protein