PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977779.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 287aa MW: 33175.4 Da PI: 6.7966

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977779.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.8	1.7e-52	8	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + XP_024977779.1 8 LPPGFRFHPTDEELVMHYLCRKCASQTISV-PIIAEIDLYKFDPWQLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK- 100 79**************************.88***********6666689*********************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+ap+g+kt+W+mheyrl XP_024977779.1 101 -PKAVGIKKALVFYAGKAPRGVKTNWIMHEYRL 132 .778*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MTGDSLELPP GFRFHPTDEE LVMHYLCRKC ASQTISVPII AEIDLYKFDP WQLPDMALYG 60 EKEWYFFSPR DRKYPNGSRP NRAAGTGYWK ATGADKPIGK PKAVGIKKAL VFYAGKAPRG 120 VKTNWIMHEY RLANVDRSAG KRNNNLRLDD WVLCRIYNKK GVLEKHLTSD VKSTSFSEME 180 IETKPKITPY SPIENVSSQH RPSSIPHHVM DDIFNFDTSE SVPTLHTDSS SEHEKEVQSE 240 VKKDEYQFNY MDPFTDDAFT PQSQYYNDYQ LSPLQDIFTF MPKSFQM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-119	NAC family protein