PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977623.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 360aa MW: 42238.8 Da PI: 10.1091

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.8	9.8e-15	10	89	18	90
FAR1 18 kskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++kk+++ + i +r++ Cs++g++++++ + e++ r+++ +r gC+a++k++++k ++ ++++++++ HnH+l+ XP_024977623.1 10 QKKKTNKYDDIQTRWLACSRQGTQRKKDFDsldmhvGERRYRNTNIKRSGCNACIKIHMTKdRASYKIYEFVEAHNHALF 89 4455556677**************999999888888999************99999************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MPALMFVFMQ KKKTNKYDDI QTRWLACSRQ GTQRKKDFDS LDMHVGERRY RNTNIKRSGC 60 NACIKIHMTK DRASYKIYEF VEAHNHALFN INDRRFSRKN RQMKYTDFKT VLNSSSYNVG 120 ARRAHRIQTA LNGEFEHTRV SEIDFKNFKR DAVACVGNKD VKMLINKLSN RRDIVPSFFF 180 EYKCNEQKLS AIFWVGEVAR INYKEFGDVI LFDGTFRTNK HAMIFVPFLA VDNHKASVVV 240 GSALISGETI DNFSWVLKAF LKCHDKQPLF VITDQCSAMK QAISMVFTEA KHRLCMWHIM 300 KKVPSKVSAA LNHDPNFNKV INKLVWNIHI GPMEFETRWH EMIHQFNLGG DTWFIEMYEI

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MPALMFVFMQ KKKTNKYDDI QTRWLACSRQ GTQRKKDFDS LDMHVGERRY RNTNIKRSGC  60
NACIKIHMTK DRASYKIYEF VEAHNHALFN INDRRFSRKN RQMKYTDFKT VLNSSSYNVG  120
ARRAHRIQTA LNGEFEHTRV SEIDFKNFKR DAVACVGNKD VKMLINKLSN RRDIVPSFFF  180
EYKCNEQKLS AIFWVGEVAR INYKEFGDVI LFDGTFRTNK HAMIFVPFLA VDNHKASVVV  240
GSALISGETI DNFSWVLKAF LKCHDKQPLF VITDQCSAMK QAISMVFTEA KHRLCMWHIM  300
KKVPSKVSAA LNHDPNFNKV INKLVWNIHI GPMEFETRWH EMIHQFNLGG DTWFIEMYEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-40	FAR1 family protein