PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977611.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 803aa MW: 91062.6 Da PI: 7.1058

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.2	4.2e-31	82	176	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s++s+r+g it+r fvC keg+r++++k+ + +r+r+etr+gCka+++vk + +gkw+v+ ++++HnHel+p XP_024977611.1 82 FYNSYARRIGFSTRVSMSRRSRRDGAITQRSFVCAKEGFRADKEKSscengGGRVKRPRVETRVGCKAMMVVKIQGSGKWVVSGFVKDHNHELVP 176 9****************************************99999988888999**********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MEFEPLGIGS DVIEFDTMRL GDGAVNVEDD ENKMFVDTQY EYGGRTMDSG YGGGEIFVSG 60 GDTGLEPYEG MEFESEEAAK AFYNSYARRI GFSTRVSMSR RSRRDGAITQ RSFVCAKEGF 120 RADKEKSSCE NGGGRVKRPR VETRVGCKAM MVVKIQGSGK WVVSGFVKDH NHELVPPDKV 180 HCLRSHRHVS GSAKSLIDTL QRAGIGPSGI MSALIKEYGG ITNVGFTERD CRNYMRSSKQ 240 RTLGGDTQLL LDYLKKKHLE DPSFFYAVQG DDDHFMNNIF WADPKARADY TYFGDTVTFD 300 TTYRSNRYRL PFAPFTGVNN HGQPVLFGCA LLVNESESSF SWLFKTWLAA MSDRPPVSIT 360 TDHDRIIRLA IKQVFPFSRH RFCKWHIFKE CQEKLCRVLA EHPSFEGELH KCVNMSDSVE 420 EFESCWSSLV DRYNIHGHEW IQTVYAERDQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY 480 VNASTTLQLF VKQYEKALES RYEKEVKADY DTINAAPLLK TPSPMEKQAA EVYTRKLFIK 540 FQEELVETLA FVATRLDSEE AISTFQVSKY EANHKPYFVR YNARVTKVTC SCQMFEFSGL 600 LCTHILTVLR VTNVLTLPSH YVLKRWTRNA KSGVTLDDHS SSLSNATPES FTVRYNNLRN 660 EALKFVDGGV ETVEIYNVAV DALQEAANKV AIAKKNGGSG RNNAKIGGTS KGDPATNNTD 720 THNATEDHQY SSDGLQSEDE QDKMIHKLSR QLEHTQRKCE VYRGNLLSVL KDIEQQRLLL 780 TVKVQNIKLG LNRSGVYIPS IVI

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MEFEPLGIGS DVIEFDTMRL GDGAVNVEDD ENKMFVDTQY EYGGRTMDSG YGGGEIFVSG  60
GDTGLEPYEG MEFESEEAAK AFYNSYARRI GFSTRVSMSR RSRRDGAITQ RSFVCAKEGF  120
RADKEKSSCE NGGGRVKRPR VETRVGCKAM MVVKIQGSGK WVVSGFVKDH NHELVPPDKV  180
HCLRSHRHVS GSAKSLIDTL QRAGIGPSGI MSALIKEYGG ITNVGFTERD CRNYMRSSKQ  240
RTLGGDTQLL LDYLKKKHLE DPSFFYAVQG DDDHFMNNIF WADPKARADY TYFGDTVTFD  300
TTYRSNRYRL PFAPFTGVNN HGQPVLFGCA LLVNESESSF SWLFKTWLAA MSDRPPVSIT  360
TDHDRIIRLA IKQVFPFSRH RFCKWHIFKE CQEKLCRVLA EHPSFEGELH KCVNMSDSVE  420
EFESCWSSLV DRYNIHGHEW IQTVYAERDQ WVPVYLRDTF FAEMSITQRS DSMNSYFDGY  480
VNASTTLQLF VKQYEKALES RYEKEVKADY DTINAAPLLK TPSPMEKQAA EVYTRKLFIK  540
FQEELVETLA FVATRLDSEE AISTFQVSKY EANHKPYFVR YNARVTKVTC SCQMFEFSGL  600
LCTHILTVLR VTNVLTLPSH YVLKRWTRNA KSGVTLDDHS SSLSNATPES FTVRYNNLRN  660
EALKFVDGGV ETVEIYNVAV DALQEAANKV AIAKKNGGSG RNNAKIGGTS KGDPATNNTD  720
THNATEDHQY SSDGLQSEDE QDKMIHKLSR QLEHTQRKCE VYRGNLLSVL KDIEQQRLLL  780
TVKVQNIKLG LNRSGVYIPS IVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein