PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977577.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28622.4 Da PI: 9.2525

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_024977577.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	85.3	1.3e-28	80	172	6	98
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ ++s+++e+ kLk+++e+Lq+ qR+l GedL++L+lkeL+qLe+qL++ l++iRs +++ +l+ ++elq ke++ e+nkaL++k+ XP_024977577.1 80 VSRSANDAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPLNLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWLEANKALQNKV 172 45566777899*******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SNMLKMLERY QNCTYSSMEV SRSANDAEQS SYKEYMKLKA KYESLQQYQR QLFGEDLGPL 120 NLKELEQLER QLDSTLRQIR SIRTQSMLDR LSELQVKERM WLEANKALQN KVRIHFYAEN 180 QAGPSWAGGE NGHSYHQHQD QHPQPQGFFQ PLDCNSNLQI GYNTIGSSQI NASTSGQNVN 240 GIVPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	7e-99	MIKC_MADS family protein