PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977547.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 283aa    MW: 31055.4 Da    PI: 5.4586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.83.9e-081362154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ +  rE+ RRdr+N+ f eL  +l +      +K++Ka+i   +++ +k+L
  XP_024977547.1 13 RKVQKADREKLRRDRLNEQFIELGNVLDPE----RPKNDKASIIIDTIQVLKDL 62
                    5677889*******************9987....69**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MTEVEAKDTS DARKVQKADR EKLRRDRLNE QFIELGNVLD PERPKNDKAS IIIDTIQVLK  60
DLATEVNRLK ADCAALSEES SELTQEKNEL REEKSSLKSD IENLNAQYQQ RVGVMYPWAA  120
IDPSSVVMPP PYSYPVALPV PSGPVPMHPF PFFTNHNPPG AIPTSSPAFM SYPNLPTAHI  180
NQTIPVYALT SHSSSKQECG SKSSDRFRGS NDEKGDHSSN VVTELELKIP GSRSGQESSA  240
GDKKGKQPER KDKSGDCSSS RYTSSQGFQD SSSNSVVENN GGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-56bHLH family protein