PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977544.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 308aa    MW: 34163.8 Da    PI: 6.0579
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.5e-083887154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ +  rE+ RRdr+N+ f eL  +l +      +K++Ka+i   +++ +k+L
  XP_024977544.1 38 RKVQKADREKLRRDRLNEQFIELGNVLDPE----RPKNDKASIIIDTIQVLKDL 87
                    5677889*******************9987....69**************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MDQWKTKLEL HQHQHIPNSC TEHREMTEVE AKDTSDARKV QKADREKLRR DRLNEQFIEL  60
GNVLDPERPK NDKASIIIDT IQVLKDLATE VNRLKADCAA LSEESSELTQ EKNELREEKS  120
SLKSDIENLN AQYQQRVGVM YPWAAIDPSS VVMPPPYSYP VALPVPSGPV PMHPFPFFTN  180
HNPPGAIPTS SPAFMSYPNL PTAHINQTIP VYALTSHSSS KQECGSKSSD RFRGSNDEKG  240
DHSSNVVTEL ELKIPGSRSG QESSAGDKKG KQPERKDKSG DCSSSRYTSS QGFQDSSSNS  300
VVENNGGI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.19e-56bHLH family protein