PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024977367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 422aa MW: 45967.5 Da PI: 6.3157 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.8 | 5.9e-06 | 311 | 349 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_024977367.1 311 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 349 5778999**********998.....8****************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence |
MADSWWDSRT RPCLDSVSVT SMNLFQETTT TATTSGGGGG GGGGGGGGGG VVGNNTQMME 60 LGLSSQPISQ SLDWNQALYR GDQRNDHHQS GYQTLIQEDH SLSSNSNFQD SQWKLSHKMY 120 SDSPSEFKQV NVRSFRLDEP VNYSDENGLN PSFQSMDHSY GSSTVIQSLF GSDNTTNQQQ 180 DSGFDQNQAM STYSYQSGYG GITLSGGGTG SGEYPPPPQE FSVNSSPPKV PSPNIASQLH 240 FSNNARFWNA SAASMNDVRS SFFPLQMQSP SSTIEDKPKK TASEMVKKSS NKPSSTKRPR 300 NENPPLPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVNVLSTPY 360 MKNGAAVMQQ QQICSEKAGE GSPIRQDLRS RGLCLVPISS TFPVTHETTV DFWTPSFGGT 420 FR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 8e-60 | bHLH family protein |