PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977367.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 422aa    MW: 45967.5 Da    PI: 6.3157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.9e-063113491154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_024977367.1 311 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 349
                     5778999**********998.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MADSWWDSRT RPCLDSVSVT SMNLFQETTT TATTSGGGGG GGGGGGGGGG VVGNNTQMME  60
LGLSSQPISQ SLDWNQALYR GDQRNDHHQS GYQTLIQEDH SLSSNSNFQD SQWKLSHKMY  120
SDSPSEFKQV NVRSFRLDEP VNYSDENGLN PSFQSMDHSY GSSTVIQSLF GSDNTTNQQQ  180
DSGFDQNQAM STYSYQSGYG GITLSGGGTG SGEYPPPPQE FSVNSSPPKV PSPNIASQLH  240
FSNNARFWNA SAASMNDVRS SFFPLQMQSP SSTIEDKPKK TASEMVKKSS NKPSSTKRPR  300
NENPPLPAFK VRKEKMGDRI TALQQLVSPF GKTDTASVLS EAIEYIKFLH EQVNVLSTPY  360
MKNGAAVMQQ QQICSEKAGE GSPIRQDLRS RGLCLVPISS TFPVTHETTV DFWTPSFGGT  420
FR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.18e-60bHLH family protein