PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977267.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 317aa MW: 35985.6 Da PI: 5.4019

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	155	198	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_024977267.1 155 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 198 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MNDIDHFDQN TLSITSQTSS SFEDFSSSLP FIFDQQTLNC SSFGQQHFLN PFIDHDKLLF 60 SPYDNTTTVT AGNIKLESSP LFDQDDYSVL SSLLDDVQNC HFVHDHVGNR VIPDPKVHEV 120 EEERRYGSGS GSVSGFNMGK SGKASKVEGQ PSKNLMAERR RRKRLNDRLS MLRSVVPKIS 180 KMDRTSILGD TIDYMKELIE KINQMQEEMD ISSNQLNLMN AKPKEIFIRN SPKFDVERRN 240 TDTHVQVCCT SKPELLISTM TTLEALGLEI HQCVISCFND FMMHASCSEE MEQRVILNSE 300 DIKQALFRNA GYGGKCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	165	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-76	bHLH family protein