PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977253.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 205aa    MW: 21771.4 Da    PI: 8.1131
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977253.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.65.7e-4510108199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+
  XP_024977253.1  10 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVDRLQKELD 104
                     7*********************************************************************************************9 PP

          DUF260  96 llke 99 
                     ++++
  XP_024977253.1 105 AANA 108
                     9876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MASSSSYNSP CAACKFLRRK CMPGCIFAPY FPPEEPQKFA NVHKIFGASN VTKLLNDLLP  60
HQREDAVNSL AYEAEARVRD PVYGCVGAIS FLQRQVDRLQ KELDAANADL IRYACNEIPT  120
GLPAVPHLSS IQPITPRQRA IDQYPGRRIG NIDGGGGGGG GGFYQSPPSF PYPYANHLPW  180
NPSNSGGNMG GGGGSDGGGG GQGNM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.22e-75LBD family protein