PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977208.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 262aa    MW: 30012.8 Da    PI: 9.0204
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.29e-42291651128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lppGfrF+Ptd+e+v +yL +kv + +l++ ++++e+ +i+k++PwdLp      e++ yfFsk++ ky +g+r+nra ++gyWkatg d+++++
  XP_024977208.1  29 LPPGFRFQPTDQEIVFQYLIRKVFSCPLPA-SIVHEIaNICKFNPWDLPGD---WEQDRYFFSKKEAKYGNGHRSNRASDDGYWKATGFDRHITR 119
                     79****************************.6788887***********44...46789**********************************99 PP

             NAM  95 k.........kgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                               ++  +g+kktLvfykg++ +g+   +t+W+mheyrl
  XP_024977208.1 120 CcynnpnmrkTEIITGMKKTLVFYKGKSLHGNsptRTSWIMHEYRL 165
                     877777665444449*********997765543449********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MSTHQNEHGE KVNMEISRFN FVRDGATKLP PGFRFQPTDQ EIVFQYLIRK VFSCPLPASI  60
VHEIANICKF NPWDLPGDWE QDRYFFSKKE AKYGNGHRSN RASDDGYWKA TGFDRHITRC  120
CYNNPNMRKT EIITGMKKTL VFYKGKSLHG NSPTRTSWIM HEYRLVHSPC SPKTTSDDQR  180
SWIQMGNWVL CHVYLNKRSR NVGVADGKKP LSSGLTPQKE LLNHGLMMMN DDDDDDDQHG  240
PSSSSSCGSS VVTREVSSIR KS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.22e-59NAC family protein