PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024977147.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 283aa    MW: 32734.1 Da    PI: 6.2628
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024977147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.4e-27955147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+  
  XP_024977147.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRAS 55
                    68*****************************************9865 PP

2K-box142.1e-06108173671
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                     + +  +++ e+ qqe+ + k+++ ++++ +R + G+  e  ++ e +  eq Le+ lk++R +K+ 
  XP_024977147.1 108 SPASGDSQLEEIQQEIIRCKSQLLEMEKRLRIFEGNPSEITTMCEAEYREQILEETLKHVRVRKQV 173
                     44478999****************************9999999999999**************974 PP

Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRASIFSGN  60
RSIEEIMARY INLPEHERGR LQNQEYLERA LGRLKGEAQD HHIQNHASPA SGDSQLEEIQ  120
QEIIRCKSQL LEMEKRLRIF EGNPSEITTM CEAEYREQIL EETLKHVRVR KQVLEKYNSS  180
MEVQSTSQVA LPQEAINVNN MVTTNPSCIL DWLPPRDQQV QIMNFMNFNG LLPQRQNEHV  240
NRAMEDGNTA NVQRPEFGQV IDMNLSPWTQ FYPTGDWNDF ALQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-53MIKC_MADS family protein