PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024977146.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 299aa MW: 34504.2 Da PI: 6.1797 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 8.1e-27 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+ XP_024977146.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRAS 55 68*****************************************9865 PP | |||||||
2 | K-box | 13.9 | 2.3e-06 | 108 | 173 | 6 | 71 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + + +++ e+ qqe+ + k+++ ++++ +R + G+ e ++ e + eq Le+ lk++R +K+ XP_024977146.1 108 SPASGDSQLEEIQQEIIRCKSQLLEMEKRLRIFEGNPSEITTMCEAEYREQILEETLKHVRVRKQV 173 44478999****************************9999999999999**************974 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRASIFSGN 60 RSIEEIMARY INLPEHERGR LQNQEYLERA LGRLKGEAQD HHIQNHASPA SGDSQLEEIQ 120 QEIIRCKSQL LEMEKRLRIF EGNPSEITTM CEAEYREQIL EETLKHVRVR KQVLEKYNSS 180 MEVQSTSQVA LPQEAINVNN MVTTNPSCIL DWLPPRDQQV QIMNFMNFNG LLPQRQNEHV 240 NRAMEDGNTA NVQRPEFGQV IDMNLSPWTQ FYPTGNGPMV MAHPGEWPFT EIFLPYDQT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-53 | MIKC_MADS family protein |