PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977109.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 343aa MW: 38710.7 Da PI: 6.6186

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.4	1.7e-50	14	150	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhP+deel+++yL +kv++++ + ++ + +vd++++ePwdLp+++ + kewyf+s+rd+kyatg r+nrat sgyWkatg XP_024977109.1 14 LPPGFRFHPRDEELISDYLSNKVSDSDSDSNHhrrhallpLLLQVDLNHCEPWDLPEMACVGGKEWYFYSQRDRKYATGLRTNRATVSGYWKATG 108 79*********************995554455667765799*********7667799**************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+ +l k ++++vg++ktLvfy grapkg+ktdWvmhe+rl XP_024977109.1 109 KDRCILGKrTQQVVGMRKTLVFYLGRAPKGKKTDWVMHEFRL 150 **9856777*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSNKLMISMV EATLPPGFRF HPRDEELISD YLSNKVSDSD SDSNHHRRHA LLPLLLQVDL 60 NHCEPWDLPE MACVGGKEWY FYSQRDRKYA TGLRTNRATV SGYWKATGKD RCILGKRTQQ 120 VVGMRKTLVF YLGRAPKGKK TDWVMHEFRL QQDHHHSSNS LKEDWVLCRV FCKNRELVGG 180 KQINKCHSNV DHEDSTLSCS SSLPPLMEPP NYSFSFDQSQ PAMPIPTSNI IDIFNQQVPC 240 FSINTPPDID IIFSNTIPPP AAADAPPANS IPVPNPSSSS ISQSLDHYSC CDQDSKKEVF 300 KAILSRFHEM DHESSTTSLS FGEGISDQSF LSDAALPVTM WYP

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSNKLMISMV EATLPPGFRF HPRDEELISD YLSNKVSDSD SDSNHHRRHA LLPLLLQVDL  60
NHCEPWDLPE MACVGGKEWY FYSQRDRKYA TGLRTNRATV SGYWKATGKD RCILGKRTQQ  120
VVGMRKTLVF YLGRAPKGKK TDWVMHEFRL QQDHHHSSNS LKEDWVLCRV FCKNRELVGG  180
KQINKCHSNV DHEDSTLSCS SSLPPLMEPP NYSFSFDQSQ PAMPIPTSNI IDIFNQQVPC  240
FSINTPPDID IIFSNTIPPP AAADAPPANS IPVPNPSSSS ISQSLDHYSC CDQDSKKEVF  300
KAILSRFHEM DHESSTTSLS FGEGISDQSF LSDAALPVTM WYP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.2	2e-87	NAC family protein