PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024977060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | SBP | ||||||||
Protein Properties | Length: 392aa MW: 43213.9 Da PI: 7.9434 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.5 | 3.5e-42 | 93 | 169 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++keyhrrhkvCevhsk+p+v ++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_024977060.1 93 CLVDGCNSDLSNCKEYHRRHKVCEVHSKTPQVSINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169 **************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence |
MDWNLKIPSW DFTEFEQGTI PNIDSSGGSS SYGGQGIKGN FSVDLKLGQV IDSGNESSLK 60 TTSASTSKMA LSPSGSSKRA RPINNTSISA ASCLVDGCNS DLSNCKEYHR RHKVCEVHSK 120 TPQVSINGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD TSRAASLFAG 180 HQGTTMLQFS SPHVYQTTTL TNPLWAGMVK SEEDVMYPAH HSNLAHKHNP FSESSSGTKK 240 LTEKQQFSLF QNSGSHLKLN HQTSPPKVCQ QPVLNFEANS SYDKLFCDGY PPPARLQPVV 300 QSDCALSLLS SSPSQTSCTT LSHVVHPPNS FPATPNPLDP GASYGGLESI MDPNGNDCNE 360 MIQMGLHHHH HHHHHHGSPD NGAPQTLPFY WE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 167 | KRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-60 | SBP family protein |