PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977060.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 392aa MW: 43213.9 Da PI: 7.9434

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.5	3.5e-42	93	169	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++keyhrrhkvCevhsk+p+v ++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_024977060.1 93 CLVDGCNSDLSNCKEYHRRHKVCEVHSKTPQVSINGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MDWNLKIPSW DFTEFEQGTI PNIDSSGGSS SYGGQGIKGN FSVDLKLGQV IDSGNESSLK 60 TTSASTSKMA LSPSGSSKRA RPINNTSISA ASCLVDGCNS DLSNCKEYHR RHKVCEVHSK 120 TPQVSINGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD TSRAASLFAG 180 HQGTTMLQFS SPHVYQTTTL TNPLWAGMVK SEEDVMYPAH HSNLAHKHNP FSESSSGTKK 240 LTEKQQFSLF QNSGSHLKLN HQTSPPKVCQ QPVLNFEANS SYDKLFCDGY PPPARLQPVV 300 QSDCALSLLS SSPSQTSCTT LSHVVHPPNS FPATPNPLDP GASYGGLESI MDPNGNDCNE 360 MIQMGLHHHH HHHHHHGSPD NGAPQTLPFY WE

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MDWNLKIPSW DFTEFEQGTI PNIDSSGGSS SYGGQGIKGN FSVDLKLGQV IDSGNESSLK  60
TTSASTSKMA LSPSGSSKRA RPINNTSISA ASCLVDGCNS DLSNCKEYHR RHKVCEVHSK  120
TPQVSINGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD TSRAASLFAG  180
HQGTTMLQFS SPHVYQTTTL TNPLWAGMVK SEEDVMYPAH HSNLAHKHNP FSESSSGTKK  240
LTEKQQFSLF QNSGSHLKLN HQTSPPKVCQ QPVLNFEANS SYDKLFCDGY PPPARLQPVV  300
QSDCALSLLS SSPSQTSCTT LSHVVHPPNS FPATPNPLDP GASYGGLESI MDPNGNDCNE  360
MIQMGLHHHH HHHHHHGSPD NGAPQTLPFY WE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-60	SBP family protein