PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977049.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 341aa MW: 37805.9 Da PI: 7.2357

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977049.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	146	197	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+ +N+ + +r+l+P++ ++++ + a+i+ A++++k+L+ XP_024977049.1 146 QRMTHITVERNRRKMMNEYLGVIRSLMPSS---YAQRGDQASIVGGAINFVKELE 197 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MSCSHFIAYD ILEREMALET RLFPQGQIGN FRYDYVLPED HIFGGFLDGT NNINHHQDSP 60 SAHAYWGNYS SSSPVMHIKD QWDPKSSPED CTGGDGCDGV ILGSSPGNMK VESPTATTPI 120 ATATAVGRRK RRRTKSGKNK EELENQRMTH ITVERNRRKM MNEYLGVIRS LMPSSYAQRG 180 DQASIVGGAI NFVKELEQKL QTLEVQKRGN NGYPPQPPPQ PFVDFFAFPQ YSLRAAGDGG 240 AGSGGSTKNR PPAMAEIEVT MVESHANLKI LSKKRQRQLL KMVAGLQCLW LTILHLNVTT 300 VEPMVLYTAS VKLEDGCQLS TVDEIATAIN CLLCRIEEES L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	133	RKRRR
2	129	134	RKRRRT
3	147	158	RMTHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-69	bHLH family protein