PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024977023.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 355aa MW: 39247 Da PI: 9.3423

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024977023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.9	4.8e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_024977023.1 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTS 108 79**************************.88***********988899***********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_024977023.1 109 gGTQKVGVKKALVFYGGKPPKGAKTNWIMHEYRL 142 77788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MESTDSSSAS KQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG AKTNWIMHEY RLADNKNNIS KPPGCDPTNK KASLRLDDWV LCRIYKKNNI 180 QRPVDSDGGG GDHTMTGMLA SIPPSISLGI TRPTSGFNAM LENHDHHNVV FDSTMLNSNE 240 NNNNNVNITT SNNLLPIKRS FPGLFWNEEN HHSGNSNNNS VPYTKRFLAE SNTTDGGVMA 300 ARTADENNGG SIAGFLNQLP QTPQMHHQQA MLGSIGDGVF RQQPYQLLPG MNWYS

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MESTDSSSAS KQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL  120
VFYGGKPPKG AKTNWIMHEY RLADNKNNIS KPPGCDPTNK KASLRLDDWV LCRIYKKNNI  180
QRPVDSDGGG GDHTMTGMLA SIPPSISLGI TRPTSGFNAM LENHDHHNVV FDSTMLNSNE  240
NNNNNVNITT SNNLLPIKRS FPGLFWNEEN HHSGNSNNNS VPYTKRFLAE SNTTDGGVMA  300
ARTADENNGG SIAGFLNQLP QTPQMHHQQA MLGSIGDGVF RQQPYQLLPG MNWYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-107	NAC family protein