PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976925.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MYB
Protein Properties Length: 335aa    MW: 37884.5 Da    PI: 6.5945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W++++++ g+ R++k+c++rw +yl
   XP_024976925.1 14 KGLWSPEEDEKLLKYITRFGVGCWSSVPKHAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.15.5e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++
   XP_024976925.1  67 RGMFSQQEEDLILNLHQVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MGRHSCCVKQ KLRKGLWSPE EDEKLLKYIT RFGVGCWSSV PKHAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILN LHQVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPNTHKPMT DNNDVKEKKI EFFDKKSEFF PSSSSSMPMT AAELEQAFHA NNGGLILSSS  180
SSMDTGSFLT KSACDPLFLV EFQSDIDPIT YNSNLLSQYQ QTGYDTSLPN LASFSDHSGS  240
KMNTTTSFIM NEARDSSSTT NSSQMNNSLS AGFQQMTFEG EMFHFNGVNV KSEEGCIGQW  300
EQQNMHEVQV NNASDFNMYP MGSLSGEYTD VFHQI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.34e-81MYB family protein