PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976912.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 191aa    MW: 22150.5 Da    PI: 10.8214
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976912.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-20951143
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++
  XP_024976912.1  9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51
                    79***************************************86 PP
2K-box68.32.5e-23851721299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL  ++ ++RskK +ll e+i+ l++  k++qe+n+ L+kkl+
  XP_024976912.1  85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDRVRSKKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK 172
                     56688********************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS  60
HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG  120
MKDLQKLERQ LRIGVDRVRS KKRRLLSEHI SLLKRNLKSM QEKNTLLNKK LKDGIDGNSS  180
LDHDIQRNQR S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141172KKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.18e-40MIKC_MADS family protein