PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25915.9 Da PI: 10.405 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++ XP_024976909.1 9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51 79***************************************86 PP | |||||||
2 | K-box | 45 | 4.7e-16 | 85 | 167 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL ++ + +ll e+i+ l++ k++qe+n+ L+kkl+ XP_024976909.1 85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDR-----RRLLSEHISLLKRNLKSMQEKNTLLNKKLK 167 56688******************************************999975.....679************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS 60 HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG 120 MKDLQKLERQ LRIGVDRRRL LSEHISLLKR NLKSMQEKNT LLNKKLKDGI DGNSSLDHDI 180 QSLKIAGGRP TIVFVSEKSL EYDLKCNSTK KPNVNLSFVY GLTFGSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 7e-37 | MIKC_MADS family protein |