PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26514.6 Da PI: 10.5656 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.8e-20 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krien ++r+ tfs+R ng+lKKA+ELS LCdaeva++ifs++ XP_024976908.1 9 KRIENATKREETFSRRTNGLLKKAFELSLLCDAEVALLIFSPS 51 79***************************************86 PP | |||||||
2 | K-box | 67.7 | 3.9e-23 | 85 | 172 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ e ++ e++ +k+ +e L+++++h+ G+dL++L +k+Lq+Le+qL ++ ++RskK +ll e+i+ l++ k++qe+n+ L+kkl+ XP_024976908.1 85 RTFEVWKDEMEEMKRMLEALETKHKHFAGDDLSTLGMKDLQKLERQLRIGVDRVRSKKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK 172 56688********************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MGRGKVEVKR IENATKREET FSRRTNGLLK KAFELSLLCD AEVALLIFSP SSPKPHLFSS 60 HGMDRTMIRY RREKGSGTTN NSGIRTFEVW KDEMEEMKRM LEALETKHKH FAGDDLSTLG 120 MKDLQKLERQ LRIGVDRVRS KKRRLLSEHI SLLKRNLKSM QEKNTLLNKK LKDGIDGNSS 180 LDHDIQSLKI AGGRPTIVFV SEKSLEYDLK CNSTKKPNVN LSFVYGLTFG SN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 172 | KKRRLLSEHISLLKRNLKSMQEKNTLLNKKLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 4e-40 | MIKC_MADS family protein |