PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976854.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28774.8 Da PI: 9.3892 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+ XP_024976854.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59 8***********************************************95 PP | |||||||
2 | K-box | 85.5 | 1.1e-28 | 80 | 170 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ +q+e+a Lk++++nLq+++R+++Ge+L+ Ls+k+Lq++e+qLe sl+ iR kK++ll+e+ieel +k + +q+en +L kk++ XP_024976854.1 80 SPISEVRFWQREAAMLKQQLKNLQENHRRMMGEELSGLSVKDLQSMENQLEMSLRGIRMKKDQLLFEEIEELNRKGNLIQHENVELCKKVN 170 45577899******************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT 60 SMKSVIDRYH KAKEEQQLTS PISEVRFWQR EAAMLKQQLK NLQENHRRMM GEELSGLSVK 120 DLQSMENQLE MSLRGIRMKK DQLLFEEIEE LNRKGNLIQH ENVELCKKVN QIREENVELY 180 NKVYGIRDAD PANRNVFATN ASSIREDPHA PIHLQLSQPD PHEAIEASLR STNLGIDGFN 240 SKGGELIAYQ R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-102 | MIKC_MADS family protein |