PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976852.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 269aa    MW: 30864.4 Da    PI: 9.1479
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976852.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.46.8e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+
  XP_024976852.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59
                    8***********************************************95 PP
2K-box83.16.2e-281152001499
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +q+e+a Lk++++nLq+++R+++Ge+L+ Ls+k+Lq++e+qLe sl+ iR kK++ll+e+ieel +k + +q+en +L kk++
  XP_024976852.1 115 LLFWQREAAMLKQQLKNLQENHRRMMGEELSGLSVKDLQSMENQLEMSLRGIRMKKDQLLFEEIEELNRKGNLIQHENVELCKKVN 200
                     568******************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT  60
SMKSVIDRYH KAKEEQQLTS PISEVREPPR PAPKLKDKEA ACFMGKDQSQ EPLQLLFWQR  120
EAAMLKQQLK NLQENHRRMM GEELSGLSVK DLQSMENQLE MSLRGIRMKK DQLLFEEIEE  180
LNRKGNLIQH ENVELCKKVN QIREENVELY NKVYGIRDAD PANRNVFATN ASSIREDPHA  240
PIHLQLSQPD PHEAIEASLR STNLGLQLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-96MIKC_MADS family protein