PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32122.7 Da PI: 9.1113 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.3 | 7.3e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+ XP_024976851.1 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59 8***********************************************95 PP | |||||||
2 | K-box | 83 | 6.8e-28 | 115 | 200 | 14 | 99 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +q+e+a Lk++++nLq+++R+++Ge+L+ Ls+k+Lq++e+qLe sl+ iR kK++ll+e+ieel +k + +q+en +L kk++ XP_024976851.1 115 LLFWQREAAMLKQQLKNLQENHRRMMGEELSGLSVKDLQSMENQLEMSLRGIRMKKDQLLFEEIEELNRKGNLIQHENVELCKKVN 200 568******************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT 60 SMKSVIDRYH KAKEEQQLTS PISEVREPPR PAPKLKDKEA ACFMGKDQSQ EPLQLLFWQR 120 EAAMLKQQLK NLQENHRRMM GEELSGLSVK DLQSMENQLE MSLRGIRMKK DQLLFEEIEE 180 LNRKGNLIQH ENVELCKKVN QIREENVELY NKVYGIRDAD PANRNVFATN ASSIREDPHA 240 PIHLQLSQPD PHEAIEASLR STNLGIDGFN SKGGELIAYQ R |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-96 | MIKC_MADS family protein |