PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976784.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family ERF
Protein Properties Length: 334aa    MW: 36572.7 Da    PI: 6.0386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976784.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-20159208255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f++aeeAa a+++a+ kl+g
  XP_024976784.1 159 LYRGVRQRH-WGKWVAEIRLPKS---RTRLWLGTFDSAEEAALAYDKAAYKLRG 208
                     59******9.**********954...4*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MASAAMDFWN GSGFQQSTAG GELMEALEPF IKSASPPPLP LPPPSNYQNT LLLSTPSTSF  60
PYPSSSSCFL PPSPSSSSYI STIHSQPGFY PDYSIQDQFG YEQPASSFGL TQLTESQMYP  120
MQTQMDLPTQ WPQNSNLNFL APEPVPVKQS GSPPKPTKLY RGVRQRHWGK WVAEIRLPKS  180
RTRLWLGTFD SAEEAALAYD KAAYKLRGDY ARLNFPQLRH NGSHISDFKP LHSSVVAKLQ  240
TICQCLAEGK SIDGAKKSTS RRSSSAAAAK QATVSQQEVV KVEGFESEGY AGSGNSSPSS  300
DLTFPEFTAD DGWCGSEAFS LEKYPSYEID WGSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.13e-60ERF family protein