PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976470.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 509aa    MW: 56892 Da    PI: 5.9762
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.21.5e-1341405092374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +elLl+cA+ v++++   a++l+++l+ ++s +gdp +Rl ay++e+L arl++s+s++yk l+++e +     + l++++l+++++P++kf++l
  XP_024976470.1 140 KELLLACAKSVAENESITANWLMSELRPMVSVSGDPSRRLGAYMLEGLVARLSSSGSSIYKGLRCKEPT---GGDLLSYMRLLYDACPYFKFGFL 231
                     689*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+++e+r+HiiDf+i++G QW++L++aLasRp+gpp+lRiTgv++++s   +   ++ +g+rLa++Ae++++pfef+  v+   +++
  XP_024976470.1 232 AANGAIAEAMKNESRIHIIDFQIGHGSQWVTLIKALASRPGGPPKLRITGVDDSTSAhaRGGGVSIIGQRLADLAESCNIPFEFHG-VTVFGSEI 325
                     *****************************************************9888888999***********************.688899** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     e+e+L ++pgE laVn++++lh+++desv+ +++rd++L+lvkslsPkvv++veqe++ n+++F++rf e+l+yy+a+f+s++++lpr+++eri+
  XP_024976470.1 326 EVEHLGIQPGEPLAVNFAFMLHHMPDESVDPRNHRDRLLRLVKSLSPKVVTLVEQESNVNTAPFFHRFQETLNYYTAIFESIDVTLPRDHQERIN 420
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+r+ivn++ace+aer+erhe l+kWr+r+++aGFk++pl+++++ ++k+ll++++++ yr ee++g+l+lgW+dr Lv+ +aW+
  XP_024976470.1 421 VEQHCLARDIVNIIACEEAERVERHELLGKWRSRFTMAGFKAYPLNSYVNGTIKALLANYSEK-YRFEERDGALFLGWMDRDLVASCAWQ 509
                     *************************************************************65.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    
MQASKQNHYR NPAEKMDRNL YSAEIDQGGR FSVQTPEFGN YSSSTASFSS NGSPISQPDS  60
HSYRPDIYHS PDYTYAAHVS RVGFADNTED LEYRLRELES AMLGTDQDSM GSYDVPSSWC  120
GTNQTASKTI TEMISRGDFK ELLLACAKSV AENESITANW LMSELRPMVS VSGDPSRRLG  180
AYMLEGLVAR LSSSGSSIYK GLRCKEPTGG DLLSYMRLLY DACPYFKFGF LAANGAIAEA  240
MKNESRIHII DFQIGHGSQW VTLIKALASR PGGPPKLRIT GVDDSTSAHA RGGGVSIIGQ  300
RLADLAESCN IPFEFHGVTV FGSEIEVEHL GIQPGEPLAV NFAFMLHHMP DESVDPRNHR  360
DRLLRLVKSL SPKVVTLVEQ ESNVNTAPFF HRFQETLNYY TAIFESIDVT LPRDHQERIN  420
VEQHCLARDI VNIIACEEAE RVERHELLGK WRSRFTMAGF KAYPLNSYVN GTIKALLANY  480
SEKYRFEERD GALFLGWMDR DLVASCAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein