PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976429.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 372aa MW: 42223 Da PI: 6.5123

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.3e-09	295	330	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+ +gL+++q+ +WF N+R ++ XP_024976429.1 295 YKWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 330 4679*****************************885 PP
2	ELK	37.9	3.9e-13	250	271	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_024976429.1 250 ELKNHLLRKYSGYLSSLKQELS 271 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MEDYMGQMRE NSSSNNTGTT SATFLYGSGG GSVLGPDATA NTSLYGRGGS SIGNESDPGG 60 YHHLQYHHHH HQHHPVVKIE TGGTQKFHNY PSVMSFHNED EALKAKIISH PHYSNLLQAY 120 MDCQKVGAPP EIVGRLTAVR QEYEARQRAN LLNSGCRDNY KDPELDQFME AYYDMLVKYK 180 EELTRPIQEA MEFMRRIESQ LSTLTISTSS TNASPDDSKC EVTGSSDEEQ ENSGGETELP 240 EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP 300 SESEKVALAE ATGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA AAATALYMEG 360 HYMGEGPYRL GP

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MEDYMGQMRE NSSSNNTGTT SATFLYGSGG GSVLGPDATA NTSLYGRGGS SIGNESDPGG  60
YHHLQYHHHH HQHHPVVKIE TGGTQKFHNY PSVMSFHNED EALKAKIISH PHYSNLLQAY  120
MDCQKVGAPP EIVGRLTAVR QEYEARQRAN LLNSGCRDNY KDPELDQFME AYYDMLVKYK  180
EELTRPIQEA MEFMRRIESQ LSTLTISTSS TNASPDDSKC EVTGSSDEEQ ENSGGETELP  240
EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP  300
SESEKVALAE ATGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA AAATALYMEG  360
HYMGEGPYRL GP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-134	TALE family protein