PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976428.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TALE

Protein Properties

Length: 379aa MW: 42993.9 Da PI: 6.6052

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	302	337	20	55
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+ +gL+++q+ +WF N+R ++ XP_024976428.1 302 YKWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 337 4679*****************************885 PP
2	ELK	37.8	3.9e-13	257	278	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s XP_024976428.1 257 ELKNHLLRKYSGYLSSLKQELS 278 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MEDYMGQMRE NSSSNNTGTT SATFLYGSGG GSVLGPDATA NTSLYGRGGS SIGNESDPGG 60 YHHLQYHHHH HQHHPVVKIE TGGTQKFHNY PSVMSFHNED EALKAKIISH PHYSNLLQAY 120 MDCQKVGAPP EIVGRLTAVR QEYEARQRAN LLNSGCRDNY KDPELDQFME AYYDMLVKYK 180 EELTRPIQEA MEFMRRIESQ LSTLTISTSS TNASPGRIFI SPDDSKCEVT GSSDEEQENS 240 GGETELPEID PRAEDRELKN HLLRKYSGYL SSLKQELSKK KKKGKLPKEA RQKLLSWWEL 300 HYKWPYPSES EKVALAEATG LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAAAA 360 TALYMEGHYM GEGPYRLGP

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MEDYMGQMRE NSSSNNTGTT SATFLYGSGG GSVLGPDATA NTSLYGRGGS SIGNESDPGG  60
YHHLQYHHHH HQHHPVVKIE TGGTQKFHNY PSVMSFHNED EALKAKIISH PHYSNLLQAY  120
MDCQKVGAPP EIVGRLTAVR QEYEARQRAN LLNSGCRDNY KDPELDQFME AYYDMLVKYK  180
EELTRPIQEA MEFMRRIESQ LSTLTISTSS TNASPGRIFI SPDDSKCEVT GSSDEEQENS  240
GGETELPEID PRAEDRELKN HLLRKYSGYL SSLKQELSKK KKKGKLPKEA RQKLLSWWEL  300
HYKWPYPSES EKVALAEATG LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQNAAAA  360
TALYMEGHYM GEGPYRLGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-134	TALE family protein