PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976396.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 346aa MW: 39478 Da PI: 7.096

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	11	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_024976396.1 11 VPPGFRFHPTDEELLYYYLWKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 104 69**************************.9***********943444443456******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g++ktLvfy+grap+g+ktdW+mheyrl XP_024976396.1 105 HLLsNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 141 98658899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MMATGNGQVS VPPGFRFHPT DEELLYYYLW KKVSYEAIDL DVIREVDLNK LEPWDLKDKC 60 RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHLLSNS KRIGMRKTLV 120 FYTGRAPHGQ KTDWIMHEYR LDDHYPNPSE VQEDGWVVCR VFKKKSHNRS PFQSDQHHTL 180 QPADDHHQLT DQDNNKNGSL QLQALHNNSY DSSTSATTLF DSSMHLPQLL TSPDDHTPYF 240 QGCTMMINDM DSSRNLLSLM SSASCRAGNC AGCSSGHQPQ DKPLLATNND WSFLDKLLAS 300 NQHHLGITSF DPSSSQPFHH PDVNPSSHVF PFHYLGYETD ILKFSK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MMATGNGQVS VPPGFRFHPT DEELLYYYLW KKVSYEAIDL DVIREVDLNK LEPWDLKDKC  60
RIGSGPQNEW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHLLSNS KRIGMRKTLV  120
FYTGRAPHGQ KTDWIMHEYR LDDHYPNPSE VQEDGWVVCR VFKKKSHNRS PFQSDQHHTL  180
QPADDHHQLT DQDNNKNGSL QLQALHNNSY DSSTSATTLF DSSMHLPQLL TSPDDHTPYF  240
QGCTMMINDM DSSRNLLSLM SSASCRAGNC AGCSSGHQPQ DKPLLATNND WSFLDKLLAS  300
NQHHLGITSF DPSSSQPFHH PDVNPSSHVF PFHYLGYETD ILKFSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KKKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	1e-100	NAC family protein