PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976394.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 362aa MW: 41332 Da PI: 7.0104

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.3	2.6e-52	27	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_024976394.1 27 VPPGFRFHPTDEELLYYYLWKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAI 120 69**************************.9***********943444443456******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +g++ktLvfy+grap+g+ktdW+mheyrl XP_024976394.1 121 HLLsNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 157 98658899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MHEESFKLYF AEGAGRMMAT GNGQVSVPPG FRFHPTDEEL LYYYLWKKVS YEAIDLDVIR 60 EVDLNKLEPW DLKDKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI 120 HLLSNSKRIG MRKTLVFYTG RAPHGQKTDW IMHEYRLDDH YPNPSEVQED GWVVCRVFKK 180 KSHNRSPFQS DQHHTLQPAD DHHQLTDQDN NKNGSLQLQA LHNNSYDSST SATTLFDSSM 240 HLPQLLTSPD DHTPYFQGCT MMINDMDSSR NLLSLMSSAS CRAGNCAGCS SGHQPQDKPL 300 LATNNDWSFL DKLLASNQHH LGITSFDPSS SQPFHHPDVN PSSHVFPFHY LGYETDILKF 360 SK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MHEESFKLYF AEGAGRMMAT GNGQVSVPPG FRFHPTDEEL LYYYLWKKVS YEAIDLDVIR  60
EVDLNKLEPW DLKDKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI  120
HLLSNSKRIG MRKTLVFYTG RAPHGQKTDW IMHEYRLDDH YPNPSEVQED GWVVCRVFKK  180
KSHNRSPFQS DQHHTLQPAD DHHQLTDQDN NKNGSLQLQA LHNNSYDSST SATTLFDSSM  240
HLPQLLTSPD DHTPYFQGCT MMINDMDSSR NLLSLMSSAS CRAGNCAGCS SGHQPQDKPL  300
LATNNDWSFL DKLLASNQHH LGITSFDPSS SQPFHHPDVN PSSHVFPFHY LGYETDILKF  360
SK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	183	KKKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.1	1e-99	NAC family protein