PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976378.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27646.6 Da PI: 8.2379 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.4 | 5.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl eys+ XP_024976378.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTKGKLCEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 88.8 | 1e-29 | 84 | 175 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ + e+ k+k++ie Lq++qRhl+GedL+sLslkeLq+Leqq++ +l++ R +Kn+l+l++i++lqkk k+lq++n+ L+++++e XP_024976378.1 84 DPQSQTLEIISEHGKMKARIELLQKTQRHLMGEDLDSLSLKELQNLEQQIDMALRRLRLRKNHLMLQSISNLQKKDKALQDQNNVLSQEIKE 175 455666677899*****************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MGRGRVTLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST KGKLCEYSTD 60 ASMERILERY ERHLYVERQL NADDPQSQTL EIISEHGKMK ARIELLQKTQ RHLMGEDLDS 120 LSLKELQNLE QQIDMALRRL RLRKNHLMLQ SISNLQKKDK ALQDQNNVLS QEIKEKEIEQ 180 SQSPPVEQQT HENMSSFQLG TLNLGEIYGA GGEEGEIMEE TQRGKSVMPH WMLQYMRQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 144 | RRLRLRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-82 | MIKC_MADS family protein |